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Archived Genome Template Packages for Utilizing dbSNP/COSMIC/GERP Associations

 

DNASTAR provides genome template packages for SeqMan NGen, which enable use of the dbSNP/COSMIC/GERP association feature. The most current builds are located on our genome template packages page, however, should you need an older build, they are listed below. The following archived data packages contain the template sequence, annotations, and associated dbSNP/COSMIC/GERP entries for a particular organism build.

 

To use one of these data packages:

  1. 1. Download the appropriate zipped file based on the organism you are using.
  2. 2. Decompress the zipped file.
  3. 3. When the Project Setup Wizard prompts you to specify a template, select the decompressed directory using Add Genome Package.

 

Archived Data Packages (Compatible with SeqMan NGen versions 11.2 and earlier)
Organism
dbSNP Build
Assembly

Compressed
File Size (MB)

Decompressed
File Size (MB)

Data Package Download

Apis mellifera
138
Amel_4.5
101 348
zipped file
Arabidopsis thaliana
138
TAIR10
83 347
zipped file
Bos taurus
138
UMD_3.1
1,190 3,670
zipped file
Caenorhabditis  elegans
138
WS195
37 145
zipped file
Canis lupus familiaris 139 3.1 1,030 3,240 zipped file
Danio rerio
138
Zv9
581 1,820
zipped file
Gallus gallus
138
4.0
479 1,470
zipped file
Gallus gallus 1002 Gallus_gallus-2.1 415 1,310 zipped file
Homo sapiens
GRCh36/hg18
1,320 4,260
zipped file
Homo sapiens
138
GRC37.p13
3,460 6,890
zipped file
Homo sapiens, CEU reference 137 GRCh37.p5/hg19 3,110 6,260 zipped file
Homo sapiens, CHBJPT reference 137 GRCh37.p5/hg19 3,110 6,260 zipped file
Homo sapiens, YRI reference 137 GRCh37.p5/hg19 3,110 6,260 zipped file
Mus musculus strain C57BL/6J 131 MGSCv37
NCBI build 37.2
873 3,090
zipped file
Mus musculus
138
GRCm38
1,510 4,560
zipped file
Oryza sativa
138
4.0
227 750
zipped file
Rattus norvegicus
strain BN/SsNHsdMCW
130
RGSC_3.4
NCBI build 4.2
941 3,290
zipped file
Rattus norvegicus strain BNSsNHsdMCW 136 RGSC_3.4
NCBI build 4.2
1,067 3,590
zipped file
Solanum lycopersicum 139 2.40 323 1,050 zipped file

Note: All of the archived data packages above are compatible only with SeqMan NGen versions 11.2 and earlier.