SeqMan NGen

Software for Next-Gen Sequence Assembly

The keystone of Lasergene Genomics Suite, SeqMan NGen, is groundbreaking sequence assembly software that has the ability to assemble any size genome quickly and accurately on a desktop computer. SeqMan NGen also now offers the ability to run and manage NGS assemblies directly on the Cloud using DNASTAR Cloud Assemblies. SeqMan NGen assembles data from all major next-gen sequencing platforms, and provides an extremely easy-to-use interface that steps you through your sequence assembly and analysis project. SeqMan NGen is fully integrated with SeqMan Pro, so that once your assembly is complete, you can continue with downstream analysis including discovering SNPs and small indels using Bayesian statistical models, identifying large insertions and deletions, evaluating coverage, and annotating your consensus sequence. SeqMan NGen also assembles RNA-Seq, ChIP-Seq, and miRNA data, allowing easy, integrated, post-assembly analysis in ArrayStar with QSeq of both gene expression and variant data.

Features & Highlights


Assemble and Align NGS Data Quickly and Accurately


Perform In-Depth Post-Assembly Analysis with Ease

  • SNP and genotype calling in haploid and diploid organisms performed using Bayesian statistical models
  • SNP and small indels compared to dbNSFP, dbSNP, COSMIC, and GERP databases during assembly for all major model organisms
  • Structural variant report available for identifying large insertions and deletions as well as small indels in reference-guided alignments
  • Depth of coverage graphs and reports, consensus annotation, and contig scaffolding offered for comprehensive project analysis and finishing

Next-Gen Software
For All Major Sequencing Technologies