SeqMan NGen- Next-Gen Sequence Assembly Software, De Novo Sequence Assembly Software, Reference-Guided Alignment Software

 

Genome Template Packages for Utilizing dbSNP/COSMIC/GERP Associations

 

In order to use the dbSNP/COSMIC/GERP association feature within SeqMan NGen, you must download and use one of the following data packages which contains the template sequence, annotations, and associated dbSNP/COSMIC/GERP entries for a particular organism build.

 

To access a data package for an older build, please see our archived genome templates page.

 

To use one of these data packages:

  1. 1. Download the appropriate zipped file based on the organism you are using.
  2. 2. Decompress the zipped file.
  3. 3. When the Project Setup Wizard prompts you to specify a template, select the decompressed directory using Add Genome Package.

 

Note: If you need a data package for an organism that is not listed the table below, you can create a custom package. The following brief video gives instructions for doing this: Video Creating a Novel SNP Database (3:05)

 

Available Data Packages
Organism
dbSNP Build
Assembly

Compressed
File Size (MB)

Decompressed
File Size (MB)

Data Package Download

Apis mellifera
138
Amel_4.5
101 348
zipped file
Arabidopsis thaliana
138
TAIR10
83 347
zipped file
Bos taurus
138
UMD_3.1
1,190 3,670
zipped file
Caenorhabditis  elegans
138
WS195
37 145
zipped file
Canis lupus familiaris 139 3.1 1,030 3,240 zipped file
Danio rerio
138
Zv9
581 1,820
zipped file
Gallus gallus
138
4.0
479 1,470
zipped file
Homo sapiens
138
GRC37.p13
3,460 6,890
zipped file
Homo sapiens, CEU reference 137 GRCh37.p5/hg19 3,110 6,260 zipped file
Homo sapiens, CHBJPT reference 137 GRCh37.p5/hg19 3,110 6,260 zipped file
Homo sapiens, YRI reference 137 GRCh37.p5/hg19 3,110 6,260 zipped file
Mus musculus
138
GRCm38
1,510 4,560
zipped file
Oryza sativa
138
4.0
227 750
zipped file
Solanum lycopersicum 139 2.40 323 1,050 zipped file