Genome Template Packages for Utilizing dbSNP/COSMIC/GERP Associations

In order to use the dbSNP/COSMIC/GERP association feature within SeqMan NGen, you must download and use one of the following data packages which contains the template sequence, annotations, and associated dbSNP/COSMIC/GERP entries for a particular organism build.

To use one of these data packages:

1. 1. Download the appropriate zipped file based on the organism you are using.
2. 2. Decompress the zipped file.
3. 3. When the Project Setup Wizard prompts you to specify a template, select the decompressed directory using Add Genome Package.

Available Data Packages

Organism	dbSNP Build	Assembly	Compressed File Size (MB)	Decompressed File Size (MB)	Data Package Download
Arabidopsis thaliana	136	TAIR10	78	358
Bos taurus	137	UMD_3.1	1,120	3,430
Bos taurus	133	UMD_3.1	844	2,920
Caenorhabditis elegans	136	WS195	53	212
Danio rerio	1002	Zv9	546	1,670
Danio rerio with unlocated contigs	1002	Zv9	561	1,730
Gallus gallus	1002	Gallus_gallus-2.1	415	1,310
Gallus gallus with unlocated contigs	1002	Gallus_gallus-2.1	440	1,400
Homo sapiens, CEU reference	137	GRCh37.p5/hg19	3,110	6,260
Homo sapiens, CHBJPT reference	137	GRCh37.p5/hg19	3,110	6,260
Homo sapiens, YRI reference	137	GRCh37.p5/hg19	3,110	6,260
Homo sapiens	137	GRCh37.p5/hg19	3,380	6,660
Homo sapiens	135	GRCh37.p5/hg19	3,492	7,360
Homo sapiens	132	GRCh37.p2/hg19	1,220	4,250
Homo sapiens	132 Build 132 converted to hg18 coordinates.	GRCh36/hg18	1,320	4,260
Mus musculus strain C57BL/6J	131	MGSCv37 NCBI build 37.2	873	3,090
Mus musculus strain C57BL/6J	128	MGSCv37 NCBI build 37.2	1,000	3,430
Oryza sativa Japonica group cultivar: Nipponbare	128	IRGSP build 4	170	632
Rattus norvegicus strain BNSsNHsdMCW	136	RGSC_3.4 NCBI build 4.2	1,067	3,590
Rattus norvegicus strain BN/SsNHsdMCW	130	RGSC_3.4 NCBI build 4.2	941	3,290

Note: If you do not see a package for your organism listed above, please let us know.

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