ChIP-Seq Analysis
DNASTAR's Lasergene Genomics Suite includes software that allows you to quickly and easily analyze ChIP-Seq data. Features of the software enable you to:
Assemble ChIP-Seq reads from any major sequencing technology against a template sequence in SeqMan NGen
Import completed assembly into ArrayStar for peak detection and gene expression analysis
Select binding proteins from the Transcription Facter database, by using a type-in pattern, or by using a position weight matrix to identify binding sites
Choose from several peak detection methods
Group peaks by the ontology of nearby genes
View read alignment for each experiment, as well as coverage along entire genome
| For more information on using Lasergene Genomics Suite for your ChIP-Seq projects, this brief video gives an overview of the workflow: |
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Lasergene Genomics Suite ChIP-Seq Benchmarks
|
Data Set |
Sequence Technology |
Reference Sequence |
Genome Size (Mbp) |
Number of Reads (M) |
Number of Bases (Mbp) |
Read Length (bp) |
Coverage |
Assembly Time** |
| ChIP- Seq (3 human samples) |
Illumina |
|
3,101 |
106 M |
1,273 |
36 |
NA |
1.5 Hrs. |
**Assembly times were calculated using a computer with a 4-Disk RAID-0. |
