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RNA-Seq Alignment and Analysis

DNASTAR's Lasergene Genomics Suite includes software that allows users to quickly and easily align next-gen RNA reads against a reference genome, and then perform in-depth analysis of the aligned data. Features of the software enable you to:

  • Align and analyze any size RNA-Seq data set, from bacteria to human - check out our benchmarks below.
  • View multiple conditions and annotations
  • Identify patterns in two, three or more intersecting sets of data
  • Compare RNA-Seq data to ChIP-Seq or microarray data
  • Export data sets and reads for SNP detection and further analysis
    • For more information on using Lasergene Genomics Suite for your RNA-Seq projects, this brief video gives an overview of the workflow:

     

    Request a fully-functional, free trial of Lasergene Genomics Suite.

     

     

    Lasergene Genomics Suite RNA-Seq Benchmarks
    Data Set
    		 Sequence Technology
    Reference Sequence
    Genome Size (Mbp)
    Number of Reads (M)
    Number of Bases (Mbp)
    		 Read Length (bp) Coverage

    Assembly Time**

    RNA-Seq (6 human samples) Data provided by Illumina.
    Illumina
    3,101
    322 M
    2,687
    50
    NA
    3.5 Hrs.
    RNA-Seq (2 human samples) Data provided by Ion Torrent.
    Ion Torrent
    3,101
    17.5 M
    875
    100
    NA
    1.5 Hrs.

    **Assembly times were calculated using a computer with a 4-Disk RAID-0.