ChIP-Seq Analysis Software


Lasergene Genomics Suite


DNASTAR's Lasergene Genomics Suite includes software that allows you to quickly and easily analyze ChIP-Seq data. Features of the software enable you to:


  • Assemble ChIP-Seq reads from any major sequencing technology against a template sequence in SeqMan NGen
  • Import a completed assembly into ArrayStar for peak detection and gene expression analysis
  • Select binding proteins from the Transcription Factor database, by using a type-in pattern, or by using a position weight matrix to identify binding sites
  • Choose from several peak detection methods
  • Group peaks by the ontology of nearby genes
  • View read alignment for each experiment, as well as coverage along the entire genome


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Lasergene Genomics Suite ChIP-Seq Benchmarks
Data Set Sequence
Technology
Reference
Sequence
Genome
Size (Mbp)
Number of
Reads (M)
Number of
Bases (Mbp)
Read
Length (bp)
Assembly
Time**
ChIP- Seq (3 human samples) Illumina Hg19+dbSNP 3,101 106 M 1,273 36 1.5 Hrs.

** Assembly times were calculated using a computer with a 4 Disk RAID-0.

Next-Gen Software
For All Major Sequencing Technologies