SeqMan NGen- Next-Gen Sequence Assembly Software, De Novo Sequence Assembly Software, Reference-Guided Alignment Software

 

Genome Template Packages for Utilizing dbSNP/COSMIC/GERP Associations

 

In order to use the dbSNP/COSMIC/GERP association feature within SeqMan NGen, you must download and use one of the following data packages which contains the template sequence, annotations, and associated dbSNP/COSMIC/GERP entries for a particular organism build.

 

To access a data package for an older build, please see our archived genome templates page.

 

To use one of these data packages:

  1. 1. Download the appropriate zipped file based on the organism you are using.
  2. 2. Decompress the zipped file.
  3. 3. When the Project Setup Wizard prompts you to specify a template, select the decompressed directory using Add Genome Package.

 

Note: If you need a data package for an organism that is not listed the table below, you can create a custom package. The following brief video gives instructions for doing this: Video Creating a Novel SNP Database (3:05)

 

Available Data Packages
Organism
dbSNP Build
Assembly

Compressed
File Size (MB)

Decompressed
File Size (MB)

Data Package Download

Apis mellifera
140
Amel_4.5
104 384
zipped file
Arabidopsis thaliana
138
TAIR10
83 347
zipped file
Bos taurus
140
UMD_3.1
1,536 4,710
zipped file
Caenorhabditis  elegans
138
WS195
52 193
zipped file
Canis lupus familiaris 139 3.1 982 3,072 zipped file
Danio rerio
138
Zv9
581 1,843
zipped file
Drosophila melanogaster 131 rel5 94 326 zipped file
Gallus gallus
140
4.0
480 1,536
zipped file
Homo sapiens
141
GRCh37.p13
3,481 7,066
zipped file
Homo sapiens 141 GRCh38 1,638 5,120 zipped file
Homo sapiens, CEU reference 141 GRCh37.p10 3,277 6,144 zipped file
Homo sapiens, CHBJPT reference 141 GRCh37.p10 3,277 6,144 zipped file
Homo sapiens, YRI reference 141 GRCh37.p10 3,277 6,144 zipped file
Mus musculus
138
GRCm38
1,536 4,710
zipped file
Oryza sativa
138
4.0
228 750
zipped file
Rattus norvegicus 138 5.0 1,126 3,686
zipped file
Solanum lycopersicum 139 2.40 308 1,005 zipped file
Sus scrofa 140 10.2 1,229 3,994 zipped file