DNASTAR Published References
DNASTAR is the worldwide leader in DNA sequence analysis software, and based on citations in peer-reviewed journals, it shows. Every year for the last 28 years, more researchers have cited DNASTAR's software in scientific journals than any other sequence analysis software.
A Sampling of 2012 Publications Citing DNASTAR Software
DNase SISPA-Next Generation Sequencing Confirms Schmallenberg Virus in Belgian Field Samples and Identifies Genetic Variation in Europe
Toon Rosseel, Matthias Scheuch, Dirk Höper, Nick De Regge, Ann Brigitte Caij, Frank Vandenbussche, Steven Van Borm
PLOS One, Jul 2012; 7: 1-6.
SeqMan NGen was used to perform a reference-guided viral genome assembly.
Migration of the Swine Influenza Virus δ -Cluster Hemagglutinin N-Linked Glycosylation Site from N142 to N144 Results in Loss of Antibody Cross-Reactivity
Ben M. Hause, Douglas L. Stine, Zizhang Sheng, Zhao Wang, Suvobrata Chakravarty, Randy R. Simonson, and Feng Li
Clin Vaccine Immunol., Sep 2012; 19: 1457-1464.
SeqMan NGen was used to perform an assembly with Ion Torrent data.
Draft Genome Sequences of Enterobacter sp. Isolate Ag1 from the Midgut of the Malaria Mosquito Anopheles gambiae
Jinjin Jiang, Celeste Alvarez, Phanidhar Kukutla, Wanquin Yu, and Jiannong Xu
J Bacteriol., Oct 2012; 194: 5481.
SeqMan NGen was used to perform a de novo bacterial genome assembly with Illumina paired-end data.
Genome Sequences of Two Freshwater Betaproteobacterial Isolates, Limnohabitans Species Strains Rim28 and Rim47, Indicate Their Capabilities as Both Photoautotrophs and Ammonia Oxidizers
Yonghui Zeng, Vojtěch Kasalický, Karel Šimek, and Michal Koblížek
J. Bacteriol., Nov 2012; 194: 6302-6303.
SeqMan NGen was used to perform a de novo bacterial genome assembly with Illumina HiSeq paired end data.
Anchored hybrid enrichment for massively high-throughput phylogenomics
Alan R. Lemmon, Sandra A. Emme, and Emily Moriarty Lemmon
Syst Biol., Oct 2012; 61: 727-744.
SeqMan NGen was used to perform a “quasi-de novo approach” assembly with Human, Chicken, Green anole, Western clawed frog, and Zebrafish IlluminaHiSeq/MiSeq paired-end data.
Genomic consequences of multiple speciation processes in a stick insect
Patrick Nosil, Zach Gompert, Timothy E. Farkas, Aaron A. Comeault, Jeffrey L. Feder, C. Alex Buerkle, and Thomas L. Parchman
Proc Biol Sci., Jun 2012 [Epub]
SeqMan NGen was used to perform a de novo assembly of T. cristinae genome with Illumina GAIIx sequence data.
Draft Genome Sequence of Vibrio fischeri SR5, a Strain Isolated from the Light Organ of the Mediterranean Squid Sepiola robusta
Mattias C. Gyllborg, Jason W. Sahl, David C. Cronin III, David A. Rasko, and Mark J. Mandel
J. Bacteriol., Mar 2012; 194: 1639
SeqMan NGen was used to perform an assembly with Illumina data.
Horizontal transfer of chloroplast genomes between plant species
Sandra Stegemann, Mandy Keuthe, Stephan Greiner, and Ralph Bock
PNAS, Feb 2012; 109: 2434-2438.
SeqMan NGen was used to perform an assembly with single-read Illumina data.
Extensive variation in surface lipoprotein gene content and genomic changes associated with virulence during an evolution of a novel North American house finch epizootic strain of Mycoplasma gallisepticum
E. R. Tulman, X. Liao, S. M. Szcezepanek, D. H. Ley, G. F. Kutish, and S. J. Geary
Microbiology, Aug 2012; 158: 2073-2088
SeqMan NGen was used to perform a de novo and templated assembly of paired-end 454 and Illumina data.
Rapid gene-based SNP and haplotype marker development in non-model eukaryotes using 3’UTR sequencing
Tyson Koepke, Scott Schaeffer, Vandhana Krishnan, Derick Jiwan, Artemus Harper, Matthew Whiting, Nnadozie Oraguzie, and Amit Dhingra
BMC Genomics, Jan 2012; 13: 18
SeqMan NGen was used to perform a de novo transcriptome assembly with 454 data.
Complete Genome Sequences of Probiotic Strains Bifidobacterium animalis subsp. lactis B420 and Bi-07
Buffy Stahl and Rodolphe Barrangou
J. Bacteriol., Aug 2012; 194: 4131-4132
SeqMan NGen was used to perform an assembly against a reference with 454 data.
Direct Tests of Enzymatic Heme Degradation by the Malaria Parasite Plasmodium falciparum
Paul A. Sigala, Jan R. Crowley, Samantha Hsieh, Jeffrey P. Henderson, and Daniel E. Goldberg
J. Biol. Chem. Nov 2012; 287: 37793-37807
MegAlign was used for sequence alignment and phylogenetic tree generation.
Altered Expression of the Poly(ADP-Ribosyl)ation Enzymes in Uveal Melanoma and Regulation of PARG Gene Expression by the Transcription Factor ERM
Vanessa Malloy-Simard, Jean-François St-Laurent, François Vigneault, Manon Gaudreault, Natasha Dargis, Marie-Christine Guérin, Steeve Leclerc, Mohib Morcos, Daniel Black, Yvonne Molgat, Dan Bergeron, Yvan de Launoit, François Boudreau, Serge Desnoyers, and Sylvain Guérin
Invest. Ophthalmol. Vis. Sci. Sep 2012; 53: 6219-6231
ArrayStar was used to analyze genes of interest through scatter plots and heat maps.
Next-Generation Ion Torrent Sequencing of Drug Resistance Mutations in Mycobacterium tuberculosis Strains
Luke T. Daum, John D. Rodriguez, Sue A. Worthy, Nazir A. Ismail, Shaheed V. Omar, Andries W. Dreyer, P. Bernard Fourie, Anwar A. Hoosen, James P. Chambers, and Gerald W. Fischer.
J. Clin. Microbiol. 2012; 50: 3831-3837.
Lasergene Core Suite was used for primer design.
Comprehensive Detection and Discrimination of Campylobacter Species by Use of Confocal Micro-Raman Spectroscopy and Multilocus Sequence Typing
Xiaonan Lu, Qian Huang, William G. Miller, D. Eric Aston, Jie Xu, Feng Xue, Hongwei Zhang, Barbara A. Rasco, Shuo Wang, and Michael E. Konkel
J. Clin. Microbiol. Sep 2012; 50: 2932-2946
SeqMan Pro was used to trim, assemble, and analyze bacterial sequences.
A Novel Bat Herpesvirus Encodes Homologues of Major Histocompatibility Complex Classes I and II, C-Type Lectin, and a Unique Family of Immune-Related Genes
Huajun Zhang, Shawn Todd, Mary Trachedjian, Jennifer A. Barr, Minhua Luo, Meng Yu, Glenn A. Marsh, Gary Crameri, and Lin-Fa Wang
J. Virol. Aug 2012; 86: 8014-8030
SeqMan Pro was used for contig assembly of 454 data.
Epigenetic stability, adaptability, and reversibility in human embryonic stem cells
Joshua D. Tompkins, Christine Hall, Vincent Chang-yi Chen, Arthur Xuejun Li, Xiwei Wu, David Hsu, Larry A. Couture, and Arthur D. Riggs
PNAS. July 2012; 109: 12544-12549
ArrayStar was used for data analysis.
The Stoichiometric Transition from Zn6Cu1-Metallothionein to Zn7-Metallothionein Underlies the Up-regulation of Metallothionein (MT) expression
Lydia Alvarez, Hector Gonzalez-Iglesias, Montserrat Garcia, Sikha Ghosh, Alfredo Sanz-Medel, and Miguel Coca-Prados
J. Biol. Chem. Aug 2012; 287: 28456-28469
ArrayStar was used for hierarchical clustering and heatmap analysis of MT isoform genes.
Virgaricin produced by Virgaria sp. FKI-4860
Takahiro Ishiii, Kenichi Nonaka, Masato Iwatsuki, Rokuro Masuma, Satoshi Ōmura, and Kazuro Shiomi
J. Antibiot (Tokyo). Mar 2012; 65: 139-141
MegAlign was used to determine sequence distances.
Evolution of HLA-DRB Genes
Gaby G.M. Doxiadis, Ilka Hoof, Nanine de Groot, and Ronald E. Bontrop
Mol Biol Evol. Dec 2012; 29: 3843-3853
SeqMan Pro was used for sequence analysis.
Evolution of the Voltage Sensor Domain of the Voltage-Sensitive Phosphoinositide Phosphatase, VSP/TPTE, Suggests a Role as a Proton Channel in Eutherian Mammals
Keith A. Sutton, Melissa K. Jungnickel, Luca Jovine, and Harvey M. Florman
Mol Biol Evol. Sep 2012; 29: 2147-2155
MegAlign was used for sequence alignment.