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SeqMan NGen Best for de novo Transcriptome Assemblies

De Novo Transcriptome

DNASTAR's SeqMan NGen software has been rated #1 for de novo transcriptome assemblies in two recent peer-reviewed articles published by BMC Genomics. Both studies compared SeqMan NGen with other products in performing a de novo transcriptome assembly – one study used 454 data; the other study used Illumina data.  Both studies came to the same conclusion – DNASTAR SeqMan NGen is the best software for performing de novo transcriptome assemblies. Learn More.

 

Features of the software enable you to:

  • Trim EST and transcriptome sequence data of all contaminating linkers, primers and vectors
  • Align Ion Torrent, 454, Illumina, and Sanger single and paired-end data using a palette of adjustable parameters
  • Visualize a coverage histogram of assembled sequences and perform SNP and variant analysis
  • Identify new mRNA via batch BLAST and export of consensus sequences

    • See a video of this workflow:

     

    De Novo Transcriptome Video

     

    Additional Details

    For more information on how DNASTAR can help with your de novo transcriptome assembly and analysis and other sequence assembly and analysis applications see our SeqMan NGen and Lasergene Core Suite pages.