Create a VCF File in SeqMan Pro to Use with ArrayStar

When you export SNP data in text format from the SeqMan Pro application for later use in ArrayStar, you must include the following columns:

•      Contig ID

•      Contig Pos

•      Ref Pos

•      Type

•      Ref Base

•      either SNP Seq or Called Seq

•      SNP%

If you wish to determine coding vs. non-coding regions or synonymous vs. non-synonymous regions in ArrayStar, you must also export the following columns:

•      Genotype

If you want to export table rows as text, CSV or VCF files, you should export these columns:

•      Feature Type

•      Either Codon or Amino Acid Change