November 2014 Publications

iStock_000012734320SmallEvery year for the last 28 years, more researchers have cited DNASTAR’s software in scientific journals than any other sequence analysis software.

 

Featured here is a sampling of publications so far in 2014. Check back each month for an update on the latest publications citing DNASTAR tools.

 

Share your publication with us, and we will post it here! Contact Jackie Carville for details at carvillej@dnastar.com or cite DNASTAR in your publications.

 

November 2014 Publications

 

Variation in Sulfur and Selenium Accumulation Is Controlled by Naturally Occurring Isoforms of the Key Sulfur Assimilation Enzyme ADENOSINE 5’-PHOSPHOSULFATE REDUCTASE2 across the Arabidopsis Species Range

Dai-Yin Chao, Patrycja Baraniecka, John Danku, Anna Koprivova, Brett Lahner, Hongbing Luo, Elena Yakubova, Brian Dilkes, Stanislav Kopriva, and David E. Salt

Plant Physiology, November 2014; 166: 1593-1608

SeqMan Pro was used for sequence assembly.

 

Detection of Pathogenic Viruses in Sewage Provided Early Warnings of Hepatitis A Virus and Norovirus Outbreaks

Maria Hellmér, Nicklas Paxéus, Lars Magnius, Lucica Enache, Birgitta Arnholm, Annette Johansson, Tomas Bergström, Heléne Norder

Applied and Environmental Microbiology, November 2014; 80: 6711-6781

SeqMan Pro was used for Sanger sequence analysis.

 

Mutant USA strain of porcine circovirus type 2 (mPCV2) exhibits similar virulence to the classical PCV2a and PCV2b strains in caesarean-derived, colostrum-deprived pigs

Tanja Opriessnig, Chao-Ting Xiao, Priscilla F. Gerber, Patrick G. Halbur, Shannon R. Matzinger and Xiang-Jin Meng

Journal of General Virology, November 2014; 95: 2495-2503

Lasergene was used for sequence alignment.

 

Global discovery of colonization determinants in the squid symbiont Vibrio fischeri

John F. Brooks II, Mattias C. Gyllborg, David C. Cronin, Sarah J. Quillin, Celeste A. Mallama, Randi Foxall, Cheryl Whistler, Andrew L. Goodman, and Mark J. Mandel

PNAS, November 2014

Lasergene used for design and analysis of cloning constructs.

 

Neofunctionalization of Duplicated Tic40 Genes Caused a Gain-of-Function Variation Related to Male Fertility in Brassica oleracea Lineages

Xiaoling Dun, Wenhao Shen, Kaining Hu, Zhengfu Zhou, Shengqian Xia, Jing Wen, Bin Yi, Jinxiong Shen, Chaozhi Ma, Jinxing Tu*, Tingdong Fu, and Ulf Lagercrantz

Plant Physiology, November 2014; 166: 1403-1419

DNASTAR software used for assembling sequencing reads.

 

Diversity-Oriented Synthesis Probe Targets Plasmodium falciparum Cytochrome b Ubiquinone Reduction Site and Synergizes With Oxidation Site Inhibitors

Amanda K. Lukens, Richard W. Heidebrecht Jr, Carol Mulrooney, Jennifer A. Beaudoin, Eamon Comer, Jeremy R. Duvall, Mark E. Fitzgerald, Daniela Masi, Kevin Galinsky, Christina A. Scherer, Michelle Palmer, Benito Munoz, Michael Foley, Stuart L. Schreiber, Roger C. Wiegand, and Dyann F. Wirth

Journal of Infectious Diseases, November 2014

SeqMan Pro used to align sequences and identify SNPs.

 

microDuMIP: target-enrichment technique for microarray-based duplex molecular inversion probes

Jung-Ki Yoon, Jinwoo Ahn, Han Sang Kim, Soo Min Han, Hoon Jang ,Min Goo Lee, Ji Hyun Lee and Duhee Bang

Nucleic Acids Research, November 2014

SeqMan Pro was used for Sanger sequence assembly and analysis.

 

VEGF-B selectively regenerates injured peripheral neurons and restores sensory and trophic functions

Victor H. Guaiquil, Zan Pan, Natalia Karagianni, Shima Fukuoka, Gemstonn Alegre, and Mark I. Rosenblatt

PNAS, November 2014

ArrayStar was used for gene expression analysis.