File types supported for Import by SeqMan Genome Assembler (SMGA)

   

 
File Types Imported By SMGA
File Type File Extension loadSeq loadTemplate loadVector loadRepeat openProject
Illumina .txt yes yes yes yes no
454 Life Sciences* .fas, .fna yes yes yes yes no
SeqMan .sqd no no no no yes
FASTA* .fas, .nt, .txt, .fna yes yes yes yes no
Phrap .ace no no no no yes
Lasergene .seq yes yes yes yes no
ABI .abi, .ab1, .abd yes yes yes yes no
DNA Multiseq .mseq yes yes yes yes no
File of Filenames .fof yes yes yes yes no
SCF2 .scf yes yes yes yes no
SCF3 .scf yes yes yes yes no
Text .txt yes yes yes yes no
GenBank .gbk,.gb yes yes yes yes no
GCG .seq, .gcg yes yes yes yes no

* Should have an associated .qual file with the same file name and a .qual extension. The .qual file must be in the same folder with the sequence file in order fro the quality scores to be used