ArrayStar with QSeq Supported File Types
» View a printable version of ArrayStar with QSeq File Types
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| File Types Imported By ArrayStar and QSeq |
|
| File Format |
ArrayStar |
QSeq |
ArrayStar
(*.dmaproj,*.astar,) |
 |
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| Affymetrix (*.chp,*.csv1, *.xml2,*.xml3*.arr4, *.cel5) |
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| Roche NimbleGen (*.call, *.calls txt, *ngd6,*.pair.txt files7) |
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| Agilent/Feature Extraction (*txt), GenePix (*.gpr)9 |
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| Illumina Microarray (*.csv, *txt) |
|
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| SNP data (*.txt, *.assembly) |
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| Illumina Sequence (*.fastq, *.fas, *txt, *.qseq.txt) |
|
9 |
| Roche 454 (*.fna, *.fas, *.sff) |
|
9 |
| FastA (*.fas, *.fa,*.nt, *txt) |
|
9,10 |
| FastQ (*.fastq) |
|
9 |
| ABI SOLiD (*.gff, *.csfasta) |
|
9 |
| SCF2/SCF3 (*.scf) |
|
9 |
| Helicos (*.fa, *.txt) |
|
9 |
| ABI11 (*.abi, *.ab1, *abd) |
|
9 |
| Lasergene DNA (*.seq) |
|
10 |
| GenBank (*.gbk, *.gb) |
|
10 |
| DNA Multi-seq (*.mseq)12 |
|
9 |
| GCG (*.seq, *.gcg) |
|
10 |
| EMBL (*.embl, *txt) |
|
10 |
| VectorNTI (*.gb) |
|
10 |
| GeneQuest (*.dad) |
|
10 |
| SeqBuilder (*.sbd, *.sbp) |
|
10 |
| SeqMan (*.sqd) |
|
9 |
| Alignment files (*.aln, *.gff, *.bed, *.SAM, *.BAM) |
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| ELAND alignment files (*.txt) |
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| Illumina alignment files (*.txt) |
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| Others (*.txt,*.csv8) |
|
9,10 |
|
1 Affymetrix annotation files.
2 Affymetrix MAGE-ML sample attributes files.
3 Affymetrix MAGE-ML annotation files.
4 Affymetrix attribute files.
5 Affymetrix files, un-normalized
6 Nimblegen design files.
7 NimbleGen files, un-normalized
8 Any user-defined, delimited text files containing annotation or expression data.
9 Sequence reads.
10 As a template/reference.
11 ArrayStar does not support ABI files without base calls.
12 ArrayStar does not recognize features saved in *.mseq files as annotations.
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| File Types Exported By ArrayStar and QSeq |
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1Only available in Gene Table view.
2 Must be selected in Configure Advanced Options before processing
3 Graphs
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