Supplementary Files for Utilizing dbSNP/COSMIC Associations
In order to use the dbSNP/COSMIC association feature within SeqMan NGen, you must download and use one of the following data packages which contains the template sequence, annotations, and associated dbSNP/COSMIC entries for a particular organism build.
To use one of these data packages:
- 1. Download the appropriate zipped file based on the organism you are using.
- 2. Decompress the zipped file.
- 3. When the Project Setup Wizard prompts you to specify a template, select the decompressed directory using Add Genome Package.
Available Data Packages
Organism |
dbSNP Build |
Assembly |
Compressed
File Size (MB) |
Decompressed
File Size (MB) |
Data Package Download
|
| Homo sapiens |
135 |
GRCh37.p5/hg19 |
3,492 |
7,360 |
|
| Homo sapiens |
132 |
GRCh37.p2/hg19 |
1,220 |
4,250 |
|
| Homo sapiens |
132 |
GRCh36/hg18 |
1,320 |
4,260 |
|
| Mus musculus strain C57BL/6J |
131 |
MGSCv37
NCBI build 37.2 |
873 |
3,090 |
|
Mus musculus
strain C57BL/6J |
128 |
MGSCv37
NCBI build 37.2 |
1,000 |
3,430 |
|
| Rattus norvegicus strain BNSsNHsdMCW |
136 |
RGSC_3.4
NCBI build 4.2 |
1,067 |
3,590 |
|
Rattus norvegicus
strain BN/SsNHsdMCW |
130 |
RGSC_3.4
NCBI build 4.2 |
941 |
3,290 |
|
| Bos taurus |
133 |
UMD_3.1 |
844 |
2,920 |
|
Oryza sativa
Japonica group
cultivar: Nipponbare |
128 |
IRGSP build 4 |
170 |
632 |
|
Note: If you do not see a package for your organism listed above, please let us know.
|
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