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SeqMan NGen Supported File Types


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File Types Imported By SeqMan NGen

File Type File Extension
Illumina .txt (scarf and fastq)
Roche 454* .fas, .fna, .sff
SeqMan .sqd
FASTA* .fas, .nt, .txt, .fna
Phrap .ace
Phred .phd
Lasergene .seq,.sbd
ABI1 .abi, .ab1, .abd
ABI SOLiD .gff, .csfasta
File of Filenames .fof
SCF2 .scf
SCF3 .scf
Text .txt
GenBank .gbk,.gb
GCG .seq, .gcg

1 SeqMan NGen does not support ABI files without base calls.

* Should have an associated .qual file with the same file name and a .qual extension. The .qual file must be in the same folder with the sequence file in order for the quality scores to be used.

SeqMan NGen supports the export of data in .sqd, .ace, and .fas formats and can generate reports in .txt format.