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Supported Sequencing Technology: Roche 454

Lasergene Genomics Suite supports accurate, fast assembly and comprehensive analysis of Roche 454 sequencing data for the following project types:

  • De novo genome assemblies
  • De novo transcriptome assemblies
  • Reference-guided genome assemblies
  • Targeted re-sequencing
  • Large-scale, multi-sample SNP analysis
  • Metagenome and population assemblies and variant analysis
  • Our software uses assembly and trimming parameters that have been optimized specifically for Roche 454 data and provides full support for Roche 454 multiplexed data.

     

    Benchmarks: Roche 454 Reference-Guided Assembly
    Data Set
    Genome Size
    Sequence Technology
    Number of Reads
    Number of Bases
    Coverage

    Assembly Time*

    Gapped?
    Yeast Genome 12 Mbp Roche 454 1 M 311 M 25X 3 Min. Y
    Human Genome 3,095 Mbp Roche 454 74 M 20,000 M 6X 6 Hrs. Y

     

    Benchmarks: Roche 454 De Novo Assembly
    Data Set
    Sequence Technology
    Number of Reads
    Number of Bases
    Coverage Contig N50Minimum contig size where at least 50% of all the sequence data is represented

    Assembly Time*

    K-12 E. coli Genome Roche 454 385 K 69 M 18X 56 22 Min.
    Rodent Transcriptome Roche 454 1 M 570 M` NA NA 2.5 Hrs.

    *All projects completed on a desktop computer that Dell sells for < $3,000.