When a portion of a sequence has been selected in any view (e.g., by double-clicking on a feature, or by dragging across the sequence with the mouse) except the Pairwise view, the Details panel contains the following information:

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  • Sequence – The name of the sequence from which the region was selected.This is not shown for pairwise alignment selections.

  • Alignment/Sequence selection(Pairwise) Alignment selection displays the inclusive coordinates of the beginning and end of the selection.

    When the sequence is not part of an alignment, (i.e., is listed with ‘unaligned sequences’), then then Alignment selection is replaced with Sequence selection. In this case, the coordinates are the ungapped sequence coordinates rather than the alignment coordinates.
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