You can export sequences and alignments to classic MegAlign, where you may realign using a different method, perform bootstrapping, or view alignment reports.
|Before performing an alignment||File > Send Sequences to MegAlign||Creates and opens a new MegAlign project containing the same sequences and sequence order as in the MegAlign Pro project.|
|After performing an alignment||File > Send Aligned Sequences to MegAlign||Sequences retain their MegAlign Pro alignment.|
|After performing an alignment and selecting a portion of the consensus||File > Send Aligned Subsequences to MegAlign||Sequences retain their MegAlign Pro alignment.|
|After performing a Mauve alignment and selecting an alignment block in the Overview||File > Send Active Block to MegAlign||Exports only the sequences in the active block.|
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