If a single sequence has been selected in any view, the Details panel may contain a subset of the following information:
| Heading |  |
The label used in the Analysis view and Overview, in blue. * Organism – The organism containing the chromosome, if available. * Description – A description of the selected chromosome, if available. * Sequence type – Type of sequences in the assembly (DNA or RNA). * Nucleotides/Residues – Number of nucleotides or residues in the selected chromosome. |
|---|---|---|
| Properties |  |
Note that the Properties for a sequence show information about a single assembly (not all assemblies) loaded into the session. The information here pertains to the first loaded assembly that covered the chromosome of interest. * Accession number – The NCBI accession number of the selected sequence. * Assembly name – The name of the assembly where the sequence or chromosome is located. * Assembly path – The file path to that assembly. * Assembly time – The time the SeqMan NGen assembly finished. * Assembly type – The type of assembly performed in SeqMan NGen, if available (e.g., Exome/Gene Panel). * Sequence shape – Linear or circular, if specified in the reference sequence. * Sequence version – The NCBI version number (the part following the decimal after the accession number) for the sequences in the chromosome or contig. * Template name – SeqMan NGen’s name for the assembly template, usually the same as its NCBI accession number. Example: In the image shown at left, the Template name is the accession number of the human ‘X’ chromosome. * Template short name – May match the label displayed in the Overview or the default name originating from the Genome Template Package used to create the assembly. |
| Data |  |
* Data specification – The name of the sequence file, including extension. * Data file time – The time the sequence file was created or modified. * Data file path – The path to the sequence file in the assembly. |
| Actions |  |
* Rename – Shortcut to Edit > Rename. * Rename with Fields – Shortcut to Edit > Rename with Fields. |
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