De novo workflows output a results folder containing the following files:
|.sqd||The main assembly output. To view and analyze the assembly, open this file with SeqMan Pro.|
|.txt||(internal use only)|
|-contigs.fas||Created when contigs are saved in FASTA format.|
|-contigs.qual||Created when contigs are saved in FASTA format. The values in the file are the sum of the base qualities at each position in the contig, up to a maximum of 90.|
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