De novo workflows output a results folder containing the following files:

File Suffix Description
.sqd The main assembly output. To view and analyze the assembly, open this file with SeqMan Pro.
.txt (internal use only)
-contigs.fas Created when contigs are saved in FASTA format.
-contigs.qual Created when contigs are saved in FASTA format. The values in the file are the sum of the base qualities at each position in the contig, up to a maximum of 90.

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