The loadRepeat command loads a sequence file to be used to identify repeat sequences in the assembly. All sequences identified as repeats will be added to the assembly last, after all non-repeats have been assembled. See our website for a list of supported file types.

Parameter Description Allowed values
file (required) Specifies the directory and file name of the repeat sequence file. A folder may also be specified, in which case all of the sequence files within that folder will be loaded and used as repetitive sequences. [directory/filename enclosed in quotes]


   file: “/Library/repetitive_seqs/123_repeat.seq”

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