The Post Assembly Options screen lets you enter a reference sequence against which to order and orient assembled contigs. You can also set requirements for minimum contig size, if you would like to do so. Different subsets of options are available depending on the workflow.

  • Check the box if you wish to specify Minimum contig size requirements. This option is not available for long-read workflows. If you check the box, you will need to enter the desired values for:

    • Min(imum) sequences – The minimum allowed number of sequences that make up a valid contig.

    • Min(imum) length -The size of the minimum allowed contig length for a contig to be included in the assembly.

Click Next > to proceed to the next wizard screen or < Back to return to the previous screen.

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