The removeSmallContigs command disassembles any contigs without reference sequences that have fewer than the specified number of sequences.
| Parameter | Description | Allowed values |
|---|---|---|
| minLength | Specifies the minimum length of a contig to prevent it from being disassembled. Wizard equivalent (de novo, special reference-guided workflows only): Assembly Options > Minimum length. | [number] Default = 0 |
| minSeqs | (required) Specifies the minimum number of sequences necessary in a contig to prevent it from being disassembled. Wizard equivalent (de novo, special reference-guided workflows only): Assembly Options > Minimum sequences. | [number] Default = 100 |
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