The trimVector command is used for fast trimming vector sequence. Each read file is processed and the trimmed file is saved to the destination folder. If the file with the same name exists, the number will appended to the file name. The file is saved in .fastq format, including trimming statistics.
| Parameter | Description | Allowed values |
|---|---|---|
| file, reads | The location and filename for the input. | [directory/filename] |
| LinkerFile | The location of file or folder with vector sequence. | [directory/filename] |
| destination | The location of output folder. | [directory] |
Example:
setVectorParam
EndCutOff: 130
MatchSize: 11
MinTrimLength: 15
TrimVector
reads: {
file: “C:\data\input.fastq”
}
LinkerFile: “c:\data\adapter.fas”
destination: “c:\data\Out\”
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