The command exportVCF is used to accept the exome capture file and VCF file and builds another VCF file containing SNPs only in the capture regions.
| Parameter | Description | Allowed values |
|---|---|---|
| userSNP | User SNP file. | [directory/filename enclosed in quotes] |
| exomeCapture | file: [directory/filename enclosed in quotes] Exome capture file. track: [text string] The name of the region of interest. |
|
| output | The output VCF file. | [directory/filename enclosed in quotes] |
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