If you are following a reference-guided RNA-Seq workflow, output results are saved in an .assembly package folder labeled with the user-specified project name and the suffix _RNA-Seq. This folder contains the following files:
| Subfolder Name | File Name | Description |
|---|---|---|
| [project name].astar | An ArrayStar project file containing data from all of the samples. | |
| [project name].script | The main script for a reference-guided assembly project. | |
| [project name].table.txt | The table containing project descriptions and corresponding files; used by the main script. | |
| [project name].template.script | The reference-guided workflow script, which is applied to all projects listed in .table.txt. | |
| [project name].astar.script | The script file executed by ArrayStar when the Launch in ArrayStar button is pressed in the Project Report. | |
| query‘n’.script | The script containing query sequences. This script is generated only if a multiple project assembly includes groups that contain non-equal numbers of files. | |
| _tableScript.template.script | The script template, executed by the XNG assembler in order to run the QNG assembler. This script is not present before the run and is generated by XNG. | |
| [project name]-qng.script | After SeqMan NGen finishes running the XNG part of the assembly, QNG assembly is performed using this script. In multi-sample projects, this file references .table.txt. | |
| [project name].Results.txt | A tab-separated table showing the assembly results. | |
| Sample‘n’.assembly | sample‘n’-0.isoforms-features | Each .assembly project contains a set of files relating to a single contig. |
| sample‘n’-0.genes-features | ||
| sample‘n’-0.bam | ||
| sample‘n’-0.coverage | ||
| Sample’n’-Reports | ‘n’-0.report.txt | A summary of the run; also shown in the Project Report. |
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