Project Overview is one of three Project Report views that may be available, depending on the assembly type that is currently open. For information on accessing or performing tasks in this view, see View information about the currently open assembly.
The available parameters differ depending on the type of assembly project.
|Contig N50||N50 is the sequence length of the shortest contig in a group of contigs at 50% of the total genome length. In other words, N50 is the point of half of the mass of the distribution. The number of bases from all contigs longer than the N50 will be close to the number of bases from all contigs shorter than the N50.|
|Largest contig size||The length of the longest contig in bp.|
|Number of contigs||The number of contigs in the finished assembly.|
|Reads assembled||The number of reads that were used in the finished assembly.|
|Reads not assembled||The number of reads that were not included in the finished assembly.|
|Average coverage||Average depth of coverage along the assembly.|
|Number of references||Number of reference sequences used.|
|Aligned sequences||Number and percentage of sequences used in the finished alignment.|
|Number of variants||Number of variants found.|
|Variant assemblies||For multi-sample assemblies only. The number of assemblies in the project.|
To export data from this view, press the Export data tool ( ) in the top right of the view. This opens a save dialog in which you can save the tabular data in comma-separated (.csv) or tab-separated (.tab) format.
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