The Pair Specifier dialog lets you choose the method for recognizing paired reads.
To access the dialog, use Project > Project Parameters. If the Pair Specifier section is not already active, click on Pair Specifier on the left.
- Choose from typical pair naming conventions in the Pair Pattern drop-down menu.
If you choose Custom, you will need to enter the custom naming convention in the Forward and Reverse boxes.
- Under Paired-End Insert, enter integers for the Minimum and Maximum expected distance (in bp) between the forward and reverse paired reads.
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