| Goal | To extract the C-regions (exons), J-segments and V-segments from this T-receptor locus sequence (AF159056), producing output in FASTA format. |
|---|---|
| Script | 4Matt.fas=extract(AF159056.gbk,'V_segment,J_segment,C_region') |
| Output (Matt.fas) | >Matt:1 atgcggtgggccctagcggtgcttctagctttcctgtctcctggtgagtgcgctgcctacagagaggatcacgggttttgttttgttttgttattttcttcttttgcaaggagcgacatactaagaaatgcctcattatattttgtgttgttcccattgcagccagtcagatatcttccaacttggaagggagaacgaagtcagtcaccaggctgactgggtcatctgctgaaatcacctgtgatcttcctggagcaagtaccttatacatccactggtacctgcaccaggaggggaaggccccacagtgtcttctgtactatgaaccctactactccagggttgtgctggaatcaggaatcactccaggaaagtatgacactggaagcacaaggagcaattggaatttgagactgcaaaatctaattaaaaatgattctgggttctattactgtgccacctgggacagg >Matt:2 atgcagtgggccctagcggtgcttctagctttcctgtctcctggtgagtgcgctgcctacagagaggatcacgggttttgttttattttcttcttttgcaaggagtaccatactaaggaattcctcattatattttgtgttgttcccactgcagccagtcagaaatcttccaacttggaagggagaacgaagtcagtcatcaggcagactgggtcatctgctgaaatcacttgtgatcttgctgaaggaagtaacggctacatccactggtacctacaccaggaggggaaggccccacagcgtcttcagtactatgactcctacaactccaaggttgtgttggaatcaggagtcagtccagggaagtattatacttacgcaagcacaaggaacaacttgagattgatactgcgaaatctaattgaaaatgactctggggtctattactgtgccacctgggacggg >Matt:3-25(similar; omitted here to conserve space) … >Matt:26 atacactactgctgcagctcacaaacacctctgcatattacatgtacctcctcctgctcctcaagagtgtggtctattttgccatcatcacctgctgtctgcttggaagaacggctttctgctgcaatggagagaaatca |
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