To view multiple alignment results:

  • MegAlign – Use View > Alignment Report.

  • MegAlign Pro – Results are displayed in the Overview and Sequences view, whose contents and appearances are controlled through the Style panel’s Overview and Sequence sections, respectively. Tracks, if present, are controlled by which tracks have been checked in the Tracks panel. For more information, see the MegAlign Pro User Guide topics Overview / Overview section, Sequences view / Sequence section, and Tracks.

    For a brief introduction to using the Tracks panel, see the following video:

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