If, in the Input Sequences screen, you choose the Experiment setup option Multi-sample, Set Up Experiments will appear as the next wizard screen.

The Experiment column is pre-loaded with the “Experiment” names specified in the Input Sequences screen. If you wish to edit an experiment name, you must use the < Back button and edit them in one of those previous screens.

In the Is Control column, check one or more boxes to designate which experiments should be used as the baseline control for variant or CNV analysis.

Click Next > to proceed to the next wizard screen or < Back to return to the previous screen.

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