The Enrichment Report displays exome and gene panel data and is one of several reports available in the Reports views. This report is only available for exome or gene panel assemblies that utilized BED files during the assembly process.

To display this report, select a row in the Experiments section of the Explorer panel and click the Show Reports () tool or use the View > Reports command. Then use the drop-down menu near the top left of the table to choose Enrichment. The report may take several minutes to populate.

The header displays the number of targeted regions (214,126 regions in the example above). The table can be customized to display a variety of data columns in any desired order (see second table, below, for a complete list).

The following table shows ways to customize the table or export table data.

Task How to
Jump to a specific region in the Analysis view Double-click on any row in the table. To see the regions displayed as data tracks in the Analysis view, see Region tracks.
Filter to locate regions with insufficient coverage Press the Filter () tool in the top right of the view. The filter area opens at the top left of the view.



  • Enter an upper threshold for average coverage (see Coverage Depth in the table below for definition). Only regions that do not meet the threshold will be shown.

  • Enter an upper threshold for % covered (see % Covered in the table below for definition). Only regions that do not meet the threshold will be shown.

    Press Enter or click anywhere on the report to update it with your customized filter parameters.
Add, rearrange, rename, or remove table columns Press the Change options in this view tool () in the top right of the view. To select which columns to display in this table, or to rename or reorder the columns, click the Choose or rearrange columns () tool. The Choose Columns dialog appears.



Available columns are on the left, while currently-applied columns are on the right.

  • To add a column to the display, select its name on the left and press the right arrow key to move it to the right.

  • To remove a column from the display, select its name on the right and press the left arrow key to move it to the left.

  • To change the order of displayed columns, select the column name you wish to move on the right, then use the up/down arrows to place it in the desired order.

  • To create a custom header for a displayed column, select its name on the right, then choose the Configure column tool (). In the popup dialog, type in the desired name and press OK.

Export data from the table Press the Export data tool () in the top right of the view. This opens a save dialog in which you can save the tabular data in comma-separated (.csv) or tab-separated (.tab) format. See Export data to a file for details.


Descriptions of available columns appear in alphabetical order below:

Column Name Description
% Covered The percent of the targeted region covered by aligned sequences.
Contig ID The name of the contig in which the exome was found.
Coverage Depth The average depth of coverage across the targeted region.
Feature The feature corresponding to the targeted region.
Length Total length of the exome in bases.
Location The range of sequence associated with the targeted region, including gaps.
MID Displays exons separately for each MID sample.
RPKM The RPKM value averaged over the set of replicate samples. Only available if replicates and replicate sets were specified in SeqMan NGen.
Read Cnt The number of reads in the exome.
SNP Count The number of variants in the exome.
Title The <title> field of the exon.

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