Filtering in the Structural Variation view

From the Structural Variation view, you can open a filter dialog to specify which SVs are shown in the table. Start by pressing the Filter tool () in the top right of the view. The filter area opens at the top left of the view.

• To the right of Min splits, enter the minimum number of “split reads” needed to determine the breakpoints of a deletion. Leave this section blank if you do not want to set a threshold.

• To the right of Min coverage, enter the minimum depth of coverage needed to determine an indel. Leave this section blank if you do not want to set a threshold.

• Check or uncheck the boxes next to Ins, Del and Indel to show/hide insertions, deletions, or both types (indels).

Click anywhere on the Structural Variation view to update it with your customized filter parameters.