Search
Related topics are listed below.
Make a Selection
Make a Selection
Within the Analysis view, you can select an entire chromosome, a portion of one, or a specific portion of chromosome corresponding to a feature. The active selection is highlighted in light blue. The selection can then be copied to the clipboard in standard or FASTA…
When a portion of a sequence is selected
GenVision Pro Interface » Panels » Details panel » When a portion of a sequence is selected
When a portion of a sequence has been selected in the Analysis view (e.g., by double-clicking on a feature, or by dragging across the sequence with the mouse), the Details panel contains the following information: Heading * Sequence – The name…
Part A: Start a new session and rename a sequence using data fields
GenVision Pro Tutorials » Try It! – Analyze an E. coli assembly » Part A: Start a new session and rename a sequence using data fields
In this first part of the GenVision Pro tutorial, you will start by downloading and extracting the tutorial data from the DNASTAR website. Next, you will begin a new session and add an E. coli assembly produced by DNASTAR’s SeqMan NGen. You will then create a…
Make a session active
Create or Open a Session » Make a session active
To make a session active: Do any of the following: Click+ on any session tab to make that session active. Click on the Window menu and choose the name of the session from the list. Press Ctrl+; (Win) or Cmd+; (Mac) to open a “session chooser.”…
Create a new session
Create or Open a Session » Create a new session
To create a new, untitled GenVision Pro session : Do any of the following: From the Welcome screen, choose New session to open a new blank session; or Add assemblies to new session to open a session and add sequences at the same time. From the Details panel,…
Rename a single sequence manually
Rename Assemblies and Tracks » Rename a single sequence manually
The Edit > Rename command lets you manually enter a label (name) to display for those sequences within the GenVision Pro application. To manually rename a single selected sequence: Select a single sequence name from any GenVision Pro view, then right-click on…
Export data to a file
Export » Export data to a file
Data can be exported using the Export data tool () located in the top right of some GenVision Pro views and panels. The table below shows export options available from each view, as well as menu commands that can be used to export aligned sequences or the consensus…
Create or Open a Session
Create or Open a Session
Because GenVision Pro does not store data when you close it, the information shown in the interface is called a “session,” rather than a “project.” Once you open GenVision Pro, you can open one or many sessions. Each session is displayed in a…
Launch a session from within ArrayStar
Create or Open a Session » Launch a session from within ArrayStar
To view and analyze a selected entry from ArrayStar: Create or open a project in DNASTAR’s ArrayStar application. Open any table and locate a row with a position of interest. Select the row and choose File > Send Selection To > GenVision Pro or right-click…
Export an image of a view
Export » Export an image of a view
GenVision Pro lets you export an image of the Overview or Analysis view for use in a text editor or similar program. Do either of the following: Press the Export image tool () in the upper right corner of the view you want to export. Use File > Export…
Create a new assembly using SeqMan NGen
Create or Open a Session » Create a new assembly using SeqMan NGen
To create a new assembly from within the GenVision Pro application, do either of the following: From the Welcome screen, click the New tab on the left and then choose New assembly with options on the right. From within a GenVision Pro session, click on the New…
When a non-empty session is open
GenVision Pro Interface » Panels » Details panel » When a non-empty session is open
If a session is open and data has been added, the Details panel contains the following information: Heading The session file name, in blue. Sequences * Sequences – Number of sequences in the assembly. * Sequence type…
When no session, or a blank session, is open
GenVision Pro Interface » Panels » Details panel » When no session, or a blank session, is open
When no session, or only a blank session, is open, the Details panel displays links to help you get started in GenVision Pro. Heading Click on the links to: * Create or open a session * Add assemblies to the session * Watch a training video…
Save a custom layout and apply it to other projects
Customize the Look and Layout » Save a custom layout and apply it to other projects
You can change the layout of GenVision Pro’s views and panels as described in Customize the look and layout. Once you have arrived at a layout you like, you can save it and then apply it to future projects, either by default or only when you specify that it be…
Troubleshoot the error “A different version is running”
Appendix » Troubleshoot the error “A different version is running”
If you receive the error “A different version of Lasergene is running” when you try to launch a Lasergene application, but another version of Lasergene actually isn’t running, there may be a lingering .state file from another version that needs to be…
Search Within the Project
Search Within the Project
To navigate to a specific position: Do any of the following: Open the Places panel and double-click on a previously-stored location. Use Edit > Go to Place or press Ctrl/Cmd+J. In some cases, the right-click option Go to Place may also be available. In the Go…
Set temporary file preferences
Appendix » Set preferences » Set temporary file preferences
GenVision Pro creates and uses temporary files while a session is open. The need for temporary file space grows with the number and length of the sequences and track data in open sessions. If you expect the temporary files will be too large to fit in the default…
Recent section
GenVision Pro Interface » Panels » Places panel » Recent section
When you perform a search for a gene, feature or numerical sequence location using the navigation tools or the Edit > Go to Place command, each found location is automatically stored in the Recent section of the Places panel. Access this section by clicking on the…
Region tracks
Work with Tracks » Region tracks
If you created an exome or gene panel assembly in SeqMan NGen using a BED file with targeted regions, GenVision Pro lets you display a Region track in the Overview and/or Analysis view. To display the Regions track, check the associated checkboxes in the Tracks panel.…
Navigation tools
GenVision Pro Interface » Navigation tools
GenVision Pro’s navigation tools are located just to the right of the button tools and consist of a “sequence selector” (the drop-down menu), a text box, a Go button, and two green arrows. By default, (Genome) is shown in the sequence selector, causing the entire…
Favorites section
GenVision Pro Interface » Panels » Places panel » Favorites section
The Favorites section is similar to the bookmarks folder for a web browser. It contains a list of previously-visited locations that you have decided you may wish to visit again. Favorites are listed in the same order in which they were added, by default, though you…
Received section
GenVision Pro Interface » Panels » Places panel » Received section
After opening a SeqMan NGen assembly in DNASTAR’s ArrayStar application, you can send up to 100 data rows from its Gene Table or SNP Table directly to GenVision Pro using the File > Send Selection To > GenVision Pro command. When you do this, each row exported…
Customize the layout of other window components
Customize the Look and Layout » Customize the layout of other window components
Controls for this application’s view, panels and expand bars are described in the following table. For information that pertains only to views, also see Customize the appearance and layout of views. Task “How To” Show or open a hidden…
When one feature is selected
GenVision Pro Interface » Panels » Details panel » When one feature is selected
If a single feature has been selected in a track in the Overview or Analysis view (e.g., by clicking one time on the feature), the Details panel contains the following information. Note that the tooltip displayed when you hover over a feature is a subset of the Details…
Coverage tracks
Work with Tracks » Coverage tracks
If data are available, you can choose to display a numeric track in the body of the Analysis view. As of Lasergene 17.3, the main numeric track type is the Coverage track. For detailed information about applying tracks, see Work with Tracks. This is the Track panel…
Jobs panel
GenVision Pro Interface » Panels » Jobs panel
After initiating an NCBI BLAST or Entrez search, you can monitor its progress and download its eventual output from the Jobs panel. This panel is not visible in a project until you have started running at least one search. To open the Jobs panel: Do any of the…
Save, Close and Exit
Save, Close and Exit
To save one or more sessions: To save one or more sessions or to overwrite a previously saved version of the session in GenVision Pro (.gvp) format To save all open sessions, use File > Save All Sessions or press Ctrl/Cmd+Shift+S. To save only the active…
Open an existing session
Create or Open a Session » Open an existing session
To open an existing GenVision Pro (.gvp) session : Do any of the following: From the Welcome screen, click the Open tab, then click on Open session. From the Details panel, click the link Open a session. Use the File > Open command. Press Ctrl+O…
Overview
GenVision Pro Interface » Views » Overview
The Overview shows an overview of the chromosome currently selected in the Genome view and its features. To access the view, click on the Overview tab (the dark blue part of the image, below) or use View > Overview > (Name) > Show. This view was released in…
Welcome screen
GenVision Pro Interface » Welcome screen
The Welcome “project” opens when you launch GenVision Pro and is a central location for opening or creating sessions or accessing help. As you open sessions, the Welcome “project” will remain as the leftmost tab unless you manually move or close…
Customize the appearance and layout of views
Customize the Look and Layout » Customize the appearance and layout of views
The following table lists ways in which you can customize the appearance and layout of views. Task How to… Show a view Use View > (View Name) > (chromosome or contig number) > Show. The third item in the command at left may or may not…
Add genomes from NCBI
Add Data » Add genomes from NCBI
To import a genome from the National Center for Biotechnology Information (NCBI) database via organism name or accession number: Choose File > Download and Add Genome or press the Download and add a genome to the session button to (). In the Download Genome…
Alignment tracks
Work with Tracks » Alignment tracks
If you are viewing an assembly created in SeqMan NGen, you can add a track to the Analysis view showing each of the aligned reads in the selected experiment using the method described in Work with Tracks. Briefly, you can display an Alignment track by opening the…
Analysis view
GenVision Pro Interface » Views » Analysis view
The Analysis view shows tracks for a single sequence. The view is empty unless the session contains only one sequence; or until a single sequence has been chosen in the Overview or Explorer panel, or by using the navigation tools or Places panel bookmarks. At that…
Part D: Work with region tracks
GenVision Pro Tutorials » Try It! – Analyze an E. coli assembly » Part D: Work with region tracks
In this part of the tutorial, you will load two BED files associated with the E. coli assembly. MG1655_m56_v3.prophage-regions.bed. contains ten regions or intervals corresponding to the locations of prophages within the genome of this particular strain…
Add assemblies
Add Data » Add assemblies
To add one or more SeqMan NGen .assembly packages to the session: Do any of the following: Drag & drop one or more assemblies from your computer’s file explorer onto an open GenVision Pro session. Press the Add assemblies to project button tool…
Table view
GenVision Pro Interface » Views » Table view
To access the Table view, perform a BLAST search. When the search is complete, the Text and Table views are displayed together in a single popup window that is separate from the main GenVision Pro window. To reopen the views at a later time, click on the Status link in…
Enrichment Report
GenVision Pro Interface » Views » Reports view » Enrichment Report
The Enrichment Report displays exome and gene panel data and is one of several reports available in the Reports views. This report is only available for exome or gene panel assemblies that utilized BED files during the assembly process. To display this report, select…
Variants view
GenVision Pro Interface » Views » Variants view
The Variants view provides a table with a row for each variant position. This view is only available for reference-guided assemblies in .assembly format. To access the Variant view, choose a contig from the Explorer panel. Then either choose View > Variants > (Contig…
Add BAM files
Add Data » Add BAM files
If you create a templated assembly in SeqMan NGen, the .assembly package output contains the reference sequence(s) as well as feature information. By contrast, BAM files (the output for assemblies with Geneious, CLC Workbench and others) do not have either type of…
Choosing and understanding Structural Variation view columns
GenVision Pro Interface » Views » Structural Variation view » Choosing and understanding Structural Variation view columns
To select which columns to display in the Structural Variation view, or to rename or reorder them, click the Choose or rearrange columns () tool. The Choose Columns dialog appears. Available columns are on the left, while currently-applied columns are on the right.…
Details panel
GenVision Pro Interface » Panels » Details panel
The Details panel shows details of the application, selection or session. Details are available for all tracks in the Overview and Analysis view, as well as the Tracks panel. To open this panel, do any of the following: Click on the Details tab (). Use the…
Appendix
Appendix
The Appendix contains the following topics: View a list of supported file types Set preferences for the Internet or for specifying temporary file locations. View IUPAC codes See the installed Lasergene file locations Turn off usage…
GenVision Pro Interface
GenVision Pro Interface
The following table describes components of the GenVision Pro user interface, along with links to more in-depth information about each item: Item Description Menus The GenVision Pro menus are: GenVision Pro (available only on…
Views
GenVision Pro Interface » Views
GenVision Pro views are the large windows on the left of the interface. The following views may be available depending on circumstances. For instance, you may need to select something or perform a search of the BLAST or Entrez databases before a particular view is…
Work with Tracks
Work with Tracks
Tracks are rows of information pertaining to a header, footer, or individual sequence row in certain GenVision Pro views. Tracks may be displayed or hidden by check or unchecking boxes in the Tracks panel. The following tracks can be applied, removed or (in some…
Add Data
Add Data
Once you have created a GenVision Pro session, the next step is to add data. To add this type of data… …see this topic Where data type appears in GenVision Pro How to view the data .assembly files created in SeqMan NGen …
Search for sequence matches (BLAST)
Search for Sequences Online » Search for sequence matches (BLAST)
The BLAST Search wizard is used to search a query sequence against one of NCBI’s databases. The sequence can be part or all of an active sequence, another sequence file on your computer, or typed/pasted-in text. The wizard consists of four consecutive screens,…
Wrap the Analysis view display
GenVision Pro Interface » Views » Analysis view » Wrap the Analysis view display
To wrap the display in the Analysis view: In the Style panel’s Analysis section, select Automatic wrapping from the Layout drop-down menu. The Analysis view will immediately wrap horizontally. If you had been using a Linear layout and had already split the…
Customize the Look and Layout
Customize the Look and Layout
The following topics describe the many ways you can customize the look and layout of GenVision Pro. Use the Style panel to change the look of a view (font styles and sizes, colors, number of decimal places, etc.) Customize the appearance and layout of…
Options section
GenVision Pro Interface » Panels » Tracks panel » Options section
The Options section is used to edit settings for the track type currently selected in the Tracks panel, and varies in appearance depending upon the selection. Access the Options section by clicking on the Tracks panel expand bar entitled Options or by choosing View >…
Panels
GenVision Pro Interface » Panels
Settings panels allow you to optimize the look, contents and layout of the GenVision Pro view. To learn what can be done within each panel and their “areas” (expandable sections within each panel), click the links…
Search wizard: Job
Search for Sequences Online » Search for sequence matches (BLAST) » Search wizard: Job
The Job screen is the fourth of four screens in the BLAST Search wizard, This screen allows you to overwrite the default search name with a custom name and initiate the BLAST search. The text box contains an automatically-generated name for the search job. If you…
Export
Export
For detailed steps on exporting data and images from GenVision Pro, see the following topics: Export an image of a view (and edit it in PowerPoint) Export data to a file a file}
Button tools
GenVision Pro Interface » Button tools
At the top of the GenVision Pro window are eight button-style tools, as well as a set of navigation tools. In the bottom right corner of each view, GenVision Pro offers two additional button-style tools for selecting the screen mode. You can toggle between…
Search for Sequences Online
Search for Sequences Online
This application lets you search National Center for Biotechnology Information (NCBI) databases for matches to text or sequence that you specify. Query part or all of a nucleotide or protein sequence against one of NCBI’s sequence databases using the Basic…
Analysis section
GenVision Pro Interface » Panels » Style panel » Analysis section
The Analysis section contains options affecting the wrapping style for rows in the Analysis view. To access it, click on the Style panel expand bar entitled Analysis, or choose View > Style > Analysis. The following table shows tasks that can be performed using…
Search wizard: Options
Search for Sequences Online » Search for sequence matches (BLAST) » Search wizard: Options
The Options screen is the third of four screens in the BLAST Search wizard, and has two tabs: Selection and Matches. These tabs allow you to customize miscellaneous parameters relating to the BLAST search. Click the Selection tab to make it active. In the…
When multiple tracks are selected
GenVision Pro Interface » Panels » Details panel » When multiple tracks are selected
If two or more tracks have been selected in the Overview or Analysis view, the Details panel contains the following information. Heading The heading contains: The number of tracks currently selected (in blue). Summary – Description of…
Specify the Experiment or Chromosome to Display
Specify the Experiment or Chromosome to Display
The Genome view can display multiple experiments, chromosomes, contigs or sequences simultaneously. However, only one of these at a time may be displayed in the Analysis view and Overview. To display Genome view rows for all uploaded session data: Do any of the…
When one track is selected
GenVision Pro Interface » Panels » Details panel » When one track is selected
If a single track has been selected in the Overview or Analysis view, the Details panel contains the following information. Heading The heading contains: Type of track or assembly name, in blue. Summary – Basic information about what…
Feature tracks
Work with Tracks » Feature tracks
One or more Feature tracks can be added to the Overview and/or to the Analysis view header or footer. Feature tracks may come from the sequences in an assembly, or can be imported separately using File > Add Track. For detailed information about applying tracks, see…
Variants section
GenVision Pro Interface » Panels » Style panel » Variants section
The Variants section contains options affecting how variants are displayed in the Analysis view when Variants tracks are applied. To access it, click on the expand bar entitled Variants in the Style panel, or choose View > Style > Variants. Most of this section…
Sashimi tracks
Work with Tracks » Sashimi tracks
Analysis of mRNA isoform expression is a key aspect of understanding gene expression. For many genes, the change in isoform ratios for a given gene produce a more significant physiological effect than the overall expression level of that gene. Isoforms are typically…
Variants tracks
Work with Tracks » Variants tracks
If you are viewing an assembly created in SeqMan NGen, you can add a Variants track to the Analysis view using the method described in Work with Tracks. Briefly, you can display this track by opening the Tracks panel and checking one or more of the boxes to the left of…
Text view
GenVision Pro Interface » Views » Text view
To access the Text view, perform a BLAST search. When the search is complete, the Text and Table views are displayed in a popup window that is separate from the main GenVision Pro window. To reopen the views at a later time, click on the Status link in the Jobs panel.…
Use Basic Editing Commands
Use Basic Editing Commands
The following basic editing commands are available in GenVision Pro: Command Keyboard Shortcut Right-Click Option Description Edit > Cut Ctrl/Cmd+X Cut This command is not enabled in GenVision Pro. Edit >…
Explorer panel
GenVision Pro Interface » Panels » Explorer panel
To open the Explorer panel, click on the Explorer tab () or use the *View > Explorer * commands. The Experiments section shows a list of the assemblies or other data sources loaded into the current GenVision Pro session and allows you to add additional files or…
Reference track
Work with Tracks » Reference track
If you are viewing a templated assembly, you can choose to display a Reference track in the Analysis view header or footer. For detailed information about applying tracks, see Work with Tracks. This is the Track panel item to check if you want to display a Reference…
Search wizard: Search
Search for Sequences Online » Search for sequence matches (BLAST) » Search wizard: Search
The Search screen is the second of four screens in the BLAST Search wizard. The Search screen is used to choose the BLAST program and database. Specify whether you wish to search for Nucleotides or Proteins. Select the desired BLAST program from the Using…
Genome view
GenVision Pro Interface » Views » Genome view
The Genome view can display multiple experiments, chromosomes, contigs or sequences simultaneously. To access the Genome view, do any of the following: Press the Home () button tool. Use the View > Genome > Show command. Click on the Genome tab. Use…
Rename Assemblies and Tracks
Rename Assemblies and Tracks
A selected assembly or track can be renamed manually or by using specified data fields. See the following topics for details: Create names automatically using specified data fields Rename a single sequence manually
Choosing and understanding Variants view columns
GenVision Pro Interface » Views » Variants view » Choosing and understanding Variants view columns
To select which columns to display in the Variants view, or to rename or reorder them, click the Choose or rearrange columns () tool. The Choose Columns dialog appears. Available columns are on the left, while currently-applied columns are on the right. To add…
Style panel
GenVision Pro Interface » Panels » Style panel
The Style panel lets you customize view formatting and layout. To open this panel, do any of the following: Click on the Style tab (). Use the View > Style > Style command. Right-click within a view and choose Show Style Panel. To change settings in the…
Change the Analysis view color scheme
GenVision Pro Interface » Views » Analysis view » Change the Analysis view color scheme
The foreground and background color schemes for the Analysis view are specified in the Analysis section of the Style panel. To open the section, click on the expand bar entitled Analysis, or choose View > Style > Analysis. Each available color scheme is described…
Tracks panel
GenVision Pro Interface » Panels » Tracks panel
The Tracks panel lets you manage tracks displayed in the views. To open this panel, do either of the following: Click on the Tracks tab (). Use the View > Tracks > Tracks command. The uppermost part of the Tracks panel lets you specify which tracks are…
Try It! – Analyze an E. coli assembly
GenVision Pro Tutorials » Try It! – Analyze an E. coli assembly
The following tutorial uses free data from the DNASTAR website to demonstrate a typical workflow in GenVision Pro. The tutorial is in four parts, which should be done in order. Begin with Part A: Start a new session and rename a sequence using data…
Pairwise view
GenVision Pro Interface » Views » Pairwise view
After the Jobs panel shows the Status of a BLAST search or Entrez search is Done, pressing the “Done” hyperlink opens the search results simultaneously in the Text, Table, and Pairwise views. All three views are contained in a large pop-up window that is…
Places panel
GenVision Pro Interface » Panels » Places panel
The Places panel and the GenVision Pro navigation tools work together so you can quickly navigate to a chromosome or sequence range that you have visited before. To open this panel, do either of the following: Click on the Places tab (). Use the View > Places…
Add tracks
Add Data » Add tracks
A data track in BED file (.bed), GenVision box file (.txt) or Wiggle (.wig) format can be imported into a GenVision session. To add tracks: Do any of the following: Drag & drop one or more track files (see above) on an open GenVision Pro session Use the…
Reports view
GenVision Pro Interface » Views » Reports view
The Reports view consists of two separate reports, each displaying data related to a single assembly or other data source. To display the Reports view, select a row in the Experiments section of the Explorer panel and click the Show Reports () tool or use the View >…
Ruler tracks
Work with Tracks » Ruler tracks
One or more Ruler tracks can be added to the Overview header and/or to the Analysis view header or footer. For detailed information about applying tracks, see Work with Tracks. These are the Track panel items to check if you want to display one or both Ruler…
Add sequences
Add Data » Add sequences
You can add a sequence to the session if it is in any of the following formats: sequence file (.seq), SeqBuilder Pro format (.sbd), MegAlign Pro format (.msa), Genbank (.gbk) or FASTA (.fas and _.fasta). To add sequences: Do any of the following: Drag & drop one…
Filter sequence search results
Search for Sequences Online » Filter sequence search results
When you press the Filter results tool () in the header above the Table or Pairwise views, there are two options: Filter and Clear Filter. Clicking on the Filter option opens the following dialog: Use the drop-down menu to choose a filter type, then enter the…
Search wizard: Query
Search for Sequences Online » Search for sequence matches (BLAST) » Search wizard: Query
The Query screen is the first of four screens in the BLAST Search wizard. The Query screen is where you add the query sequence, i.e., the sequence for which you wish to locate matches in the NCBI BLAST database. At the top of the screen, next to “Search…
When multiple sequences are selected
GenVision Pro Interface » Panels » Details panel » When multiple sequences are selected
If multiple sequences have been selected in the Genome view, the Details panel contains the following information: Heading * Number of sequences currently selected, in blue. * Sequence type – DNA or RNA (if known). * Min./Max. sequence…
When multiple features are selected
GenVision Pro Interface » Panels » Details panel » When multiple features are selected
If two or more features have been selected in a track in the Overview or Analysis view, the Details panel contains the following information: Heading The heading shows: Number of features currently selected, in blue. Type – List of all…
Part B: Work with feature tracks
GenVision Pro Tutorials » Try It! – Analyze an E. coli assembly » Part B: Work with feature tracks
Features are displayed as colored arrows in the Overview and the Analysis view. In this part of the tutorial, you will learn to toggle between displaying/hiding features, and to view features that are not currently visible. To see an information balloon for any…
Save and reopen saved search results
Search for Sequences Online » Save and reopen saved search results
To save the Table, Pairwise and Text views for the current search, use the Save as tool () in the top right of the Table view. The results are saved in .search format. To reopen saved results, choose Search > Open Search File and navigate to the .search file.…
Structural Variation view
GenVision Pro Interface » Views » Structural Variation view
In addition to variants and small insertions and deletions, genetic variation can also involve large scale rearrangements. These rearrangements may include large insertions and deletions, inversions, and translocations — collectively known as structural…
Search for text or accession number matches (Entrez)
Search for Sequences Online » Search for text or accession number matches (Entrez)
The Entrez Search wizard is used to search a text query or accession number against NCBI’s Entrez databases for nucleotides or proteins. To launch the Entrez search dialog, choose Search > Text Search in > NCBI Nucleotide or Search > Text Search in > NCBI…
When one sequence is selected
GenVision Pro Interface » Panels » Details panel » When one sequence is selected
If a single sequence has been selected in any view, the Details panel may contain a subset of the following information: Heading The label used in the Analysis view and Overview, in blue. * Organism – The organism containing the chromosome,…
Welcome to GenVision Pro
Welcome to GenVision Pro
GenVision Pro supports visualization and analysis of multiple samples from a single genome. In RNA-seq, ChIP-seq and copy number variation (CNV) studies, where coverage and peak plots are compared and used to interpret gene expression and regulation, the ability to…
Features panel
GenVision Pro Interface » Panels » Features panel
The Features panel lets you specify which feature types should be visible in the Overview and the Analysis view when the feature and region tracks are visible. To open this panel, do any of the following: Click on the Features tab (). Use the View > Features…
Copy
Copy
In many cases, once you have selected text, data, sequences or subsequences, you can copy the information to the clipboard. The copy functions described below are accessible using menu commands, context menu commands (i.e., “right-click options”), and/or keyboard…
Research references
Appendix » Research references
Taylor WR (1997). “Residual colours: a proposal for aminochromography.” Protein Engineering vol.10 no.7 pp.743 – 746. (See the PDF file.) [“Taylor” color scheme] Waterhouse AM, Procter JB, Martin DMA, Clamp M and Barton GJ (2009). “JalView version 2: a…
Filtering in the Variants view
GenVision Pro Interface » Views » Variants view » Filtering in the Variants view
From the Variants view, you can open a filter dialog to specify which variants are shown in the table. To open the Variant Filter Criteria dialog, use the Variants > Filter command, press the Filter tool () in the upper-right of the view, or right-click anywhere in the…
Set preferences
Appendix » Set preferences
To open the Set Preferences dialog on Macintosh, choose GenVision Pro > Preferences (macOS 12 and lower) or GenVision Pro > Settings (macOS 13 and higher). On Windows, choose Edit > Preferences. You can set preferences in GenVision Pro for Internet, and temporary…
Filtering in the Structural Variation view
GenVision Pro Interface » Views » Structural Variation view » Filtering in the Structural Variation view
From the Structural Variation view, you can open a filter dialog to specify which SVs are shown in the table. Start by pressing the Filter tool () in the top right of the view. The filter area opens at the top left of the view. To the right of Min splits, enter…
Part C: Investigate sequence coverage
GenVision Pro Tutorials » Try It! – Analyze an E. coli assembly » Part C: Investigate sequence coverage
GenVision Pro’s navigation tools consist of a “sequence selector,” a text box, and a Go button. In this part of the tutorial, you will use the navigation tools to go to a particular region of low coverage that begins around 4,314,000. In the navigation…