De novo workflows output a results folder containing the following files:
| File Suffix | Description |
|---|---|
| .sqd | The main assembly output. To view and analyze the assembly, open this file with SeqMan Pro or SeqMan Ultra. |
| .txt | (internal use only) |
| -contigs.fas | Created when contigs are saved in FASTA format. |
| -contigs.qual | Created when contigs are saved in FASTA format. The values in the file are the sum of the base qualities at each position in the contig, up to a maximum of 90. |
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