SeqMan NGen  v2.1                           SeqMnNGen Logo

 

Software for Next Generation sequence assembly of Illumina, Roche 454 Life Sciences, ABI SOLiD and Helicos Data

 

Key Features of NGen include:

  • Intuitive and flexible User Interface to accommodate most assembly projects
  • Networked licenses available providing cost-effective and easy access on an unlimited number of Mac and PC computers
  • Greatly increased speed and capacity for both de novo and reference-guided assemblies
  • Optimized for performing de novo assembly of transcriptome sequence data quickly and accurately for mRNA discovery
  • SNP Discovery, Management and Analysis
  • Additional advanced trimming algorithms for removal of vector, primer and linker sequences from data

    • NGen 2.1 rapidly assembles data generated from Roche 454 Life Sciences, Illumina, ABI SOLiD, Helicos and Sanger sequencing platforms. As illustrated in the Software Solutions poster for Next Gen and Third Generation sequencing technologies, NGen routinely assembles many reference guided bacterial genomes in less than 10 minutes and human chromosome 1 Roche 454 data (247MB) in just a few hours.


    Reference-Guided Genomic Assembly - NGen can be used to assemble Illumina, ABI SOLiD, Helicos and Roche 454 sequence data to template genomes.


    Variation Analysis in "Deep" Assemblies - NGen is also an efficient and accurate assembler of "deep" Illuminareg;, ABI SOLiD, Roche 454 and Helicos data sets where coverage can range from 2X to 200,000X.


    De novo Genomic Assembly - NGen can assemble both single-end and paired-end sequence data, yielding large and extremely accurate contigs and contig scaffolds.


    RNA-Seq, SAGE and Digital Gene Expression Data Assembly - NGen is also efficient in assembling transcriptome sequence data to genomic reference sequences and to multiple short "probe" reference sequences.