ANTIBODY PHAGE DISPLAY

Quickly assemble, trim, and translate phage display ABI files, then align resulting protein sequences, create phylogenetic trees, and generate accurate antibody models.

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Go from sequencing data to accurate antibody models in minutes.

Phage display technology has become one of the most popular and significant laboratory techniques for isolating antibodies, but the sequencing data resulting from phage display panning often leaves you with lots of tedious work on your hands. DNASTAR Lasergene allows you to forgo the tedium and get to the results! The antibody phage display workflow takes you through the entire analysis process, from assembling and trimming your ABI or NGS files, to aligning the translated sequences, creating phylogenetic trees, and ultimately generating accurate models of the antibody sequence. Don’t waste time trimming your sequences by hand. Let us do the work for you so that you can go from sequencing data accurate antibody models in minutes!

Antibody phage display using DNASTAR Lasergene

Assemble and trim sequencing data

Batch translate trimmed sequences

Align protein sequences and identify CDRs

Predict antibody structure

Learn more about Antibody Phage Display

Resources | Tutorials | FAQs

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Resources

Please see our resources below for more information on antibody phage display.

Accelerate Your Phage Display and Antibody Analysis Pipeline

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Phage Display Workflow

View PDF

Phage Display Assembly, Translation and Prediction Tutorial

View Tutorial

How Can DNASTAR’s Protein Tools Help You?

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Tutorials

Watch one of our video tutorials or check out our written tutorial to learn more about using the antibody phage display workflow.

De Novo Assembly and Analysis of Sanger/ABI Data

See how to quickly and easily assemble Sanger/ABI sequencing data and perform downstream analysis. This video shows you how to complete assembly setup, visualization, assembly editing and trimming, and BLAST search using SeqMan Ultra.

SeqNinja Overview

In this video, we show you how to use SeqNinja, DNASTAR’s application for advanced sequence editing.

Creating Phylogenetic Trees in MegAlign Pro

This quick video introduces the four steps to making, customizing and exporting phylogenetic trees in MegAlign Pro.

NovaFold Antibody for Antibody Modeling

This video demonstrates how NovaFold Antibody allows you to predict antibody structures based on sequence data, using a combination of homology and ab initio modeling.

Coloring a Structure in Protean 3D According to Features or Properties

This video shows how to apply a surface to a molecular structure in Protean 3D, how to color a selected feature, and how to color the entire structure in accordance with a selected biophysical or immunogenetic property.

FAQs

What DNASTAR software do I need to do antibody phage display analysis?

To do antibody phage display analysis, you’ll need Lasergene Molecular Biology for sequence assembly, sequence alignment and to create phylogenetic trees. If you need structure prediction…

To do antibody phage display analysis, you’ll need Lasergene Molecular Biology for sequence assembly, sequence alignment and to create phylogenetic trees. If you need structure prediction of the antibody, then NovaFold Antibody and Lasergene Protein are required. Optionally, you can also use NovaDock to simulate docking of antibody to an antigen.

How do I batch translate my antibody sequences?

To batch translate your antibody sequence, use the batch translation template provided in SeqNinja, part of Lasergene Molecular Biology, which will quickly translate the files after trimming.

Translation Template in SeqNinja

I have Sanger sequences with vector overhangs. How do I trim my sequences to the right reading frame for translation to protein?

To trim your sequences, first use SeqMan Ultra to assemble the sequences.

Then, show translations by selecting Consensus Translation from the Tracks panel to identify the…

To trim your sequences, first use SeqMan Ultra to assemble the sequences.

Then, show translations by selecting Consensus Translation from the Tracks panel to identify the protein start and stop codons in the antibody.

Finally, manually trim from the 5’ and 3’ ends to remove the vector by selecting and deleting the unwanted sequence.

Trimming down to the target antibody translation sequence in SeqMan Ultra

How do I design primers for this process?

To design primers for antibody phage display, we recommend designing primers that overlap the vector region so you have full antibody sequence coverage for the translation.

How do I align my antibody sequences to create a phylogenetic tree?

To align your antibody sequences, use MegAlign Pro to first perform a multiple sequence alignment and then generate a phylogenetic tree.

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