Use MegAlign Pro to easily perform a Mauve genome alignment and compare multiple genomes with structural complexity.

In the realm of multiple sequence aligners, the trusted Mauve algorithm stands apart from its traditional counterparts through its ability to align chromosome length sequences and sequences that contain structural rearrangements. Multiple genome alignments often require methods separate from traditional multiple sequence aligners, requiring you to go between various tools for your analysis. That’s why we’ve seamlessly integrated the Mauve algorithm into MegAlign Pro, so that everything you need for all of your multiple sequence alignments is in one easy-to-use application. Simply drag and drop your genomes into MegAlign Pro and perform a Mauve genome alignment using the default settings, or modify parameters to meet your needs. Following the genome alignment, MegAlign Pro makes it easy to navigate to and view conserved regions across multiple sequences, even at various zoom levels. Customize the appearance of your alignment as desired before exporting a publication-quality, editable image. Use MegAlign Pro to easily perform Mauve genome alignments in the same application you trust for all your multiple sequence alignment needs.