After running the script, SeqNinja will display a Run Completed dialog. This dialog lets you navigate to files created by SeqNinja script, and also informs you of any issues encountered while running. The Run Completed dialog appears whether the run ends naturally or is terminated manually.

If the run finishes with no warnings, this dialog will have a single tab entitled Files:

A list of output files appears in the Name column, while their paths appear in the Folder column. Click the Folder column link(s) to navigate to the folder(s) with your saved results.

If any warnings were generated during a run, the Run Completed dialog will have two tabs: Files and Warnings. Click the Warnings tab to view information about errors that prevented the run from completing successfully. The Summary section at the top contains a list of single-line warnings. Click any item in the Summary list to view complete information about it in the Details section. If the issue is related to syntax, the Details section may indicate the source of the error with a caret (^), as shown in the example below.

Click OK to close the message. After rectifying any errors, you can then initiate a new run.

Once the run has finished, you may open the results file in a text editor or another DNASTAR application. If the output format allowed it (GenBank files; Lasergene files; FASTA files when Set Full File Conversion = full), SeqNinja will automatically have updated the Locus section and added the following sequence history to the Comments section:

  • The time of creation of the sequence.
  • The name of the sequence (if applicable).
  • The SeqNinja expression that can be used to create the sequence.


The output file tethis21 Results.seq includes a sequence history showing how the sequence was created.

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