The ability to map features exists in both MegAlign Pro and SeqNinja. Here are some reasons you might want to map features in one application versus the other:
|If you want to:||Use this application:|
|View the alignment and the mapped features||x|
|Configure alignment parameters||x|
|Map features in an end-to-end alignment. For instance, to perform a Mauve alignment of end-to-end chromosomes with some rearrangement.||x|
|Map VCF features from a .vcf file.||x|
|Map features into a table, then edit the table before generating the resulting sequence or feature file||x|
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