ChIP-Seq Data Analysis Software

ChIP-Seq Data Analysis Software

Lasergene Genomics Suite

DNASTAR's Lasergene Genomics Suite includes software that allows you to quickly and easily analyze ChIP-Seq data. Features of the software enable you to:

  • Assemble ChIP-Seq reads from any major sequencing technology against a template sequence in SeqMan NGen
  • Choose from several different variant detection, normalization, and peak detection methods
  • Select binding proteins from the Transcription Factor database, by using a type-in pattern, or by using a position weight matrix to identify binding sites
  • Following assembly, use ArrayStar to analyze gene expression, peak signal values, and gene ontology
  • Visualize peaks of interest in GenVision Pro
  • Combine ChIP-Seq results and RNA-Seq data together in SeqMan NGen for combined gene expression and regulation analysis

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Lasergene Genomics Suite ChIP-Seq Data Benchmarks
Data Set Sequence
Size (Mbp)
Number of
Reads (M)
Number of
Bases (Mbp)
Length (bp)
ChIP- Seq (3 human samples) Illumina Hg19+dbSNP 3,101 106 M 1,273 36 1.5 Hrs.

** Assembly times were calculated using a computer with a 4 Disk RAID-0.

Next-Gen Software For All Major Sequencing Technologies