Project Details summarizes assembly time, the parameters used in constructing a contig, and each stage in the progress of an assembly, as well as the median pair distance and standard deviation for each set of a given sized pair library in an assembly. Project Details is one of several Project Report views that may be available, depending on the assembly type that is currently open.
To access the view, choose View > Project Report > Project Details. The Project Details report varies depending on whether an .sqd or .assembly is open.
The table below describes some parameters of interest in the .assembly version of this report.
|Total Assembled Reads||Contains information about reads that made it into the assembly. “Coalesced identical aligned reads” indicates the number of reads that were treated as duplicates.|
|Total Unassembled Reads||Lists reasons why certain reads were not included.|
|Found SNP Cnt (incl. indel lengths)||(Variant assemblies only) Shows the number of SNPs that were found.|
|Assembly Parameters||(Variant assemblies only) Shows the SNP-calling parameters specified in the SeqMan NGen wizard for this assembly.|
|SCRIPT||Below the word “SCRIPT” is the entire assembly script used in SeqMan NGen when creating this assembly.|
To export data from this view, press the Export data tool ( ) in the top right of the view. This opens a save dialog in which you can save the tabular data in comma-separated (.csv) or tab-separated (.tab) format.
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