Project Statistics is one of several Project Report views that may be available, depending on the assembly type that is currently open.
To access the view, choose View > Project Report > Project Statistics.
|Located in the table|
|Name||Name assigned to the contig during assembly or after renaming it in the Contigs and Scaffolds section.|
|Contig Length||Length of the contig in bp without counting gaps.|
|Contig Length (wGaps)||Length of the contig in bp with gaps included.|
|Total Bases||Total number of bases contained in all sequences used in the assembly.|
|Number Seq.||Number of sequences assembled into this contig.|
|Reads per Strand (Top, Bottom) and Scaffold||Number of reads on the top and bottom strands for the scaffold.|
|Average Depth||Average sequence depth over the length of the contig.|
|Cumulative Contig Length (woGaps)||Total length of this contig, without gaps, added to the total lengths of the contigs above it in the table.|
|Located below the table (certain .sqd projects only)|
|Contigs||Number of contigs in the assembly.|
|Contig N50||A weighted median statistic such that 50% of the entire assembly is contained in contigs equal to or larger than this value.|
|Largest Contig||Length in bp of the longest contig in the assembly.|
|Contig Linkage||Shows the paired reads that link contigs together.|
|PairDistances||For single libraries, the Median Observed pair distance is the median distance between paired reads across the data set (only applicable to projects where multiple paired-end libraries are used in a single project).|
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