MegAlign Pro supports the following multiple alignment methods: Clustal Omega, Clustal W, MAFFT, MUSCLE and Mauve. Click here for descriptions and a comparison of the different methods.

To learn how to perform, modify, and troubleshoot multiple alignments, see the following topics:

Multiple alignment tutorials:

The following tutorials all use free data that can be downloaded from the DNASTAR website.

The following video is a quick introduction to performing multiple alignments in MegAlign Pro:

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