The following table shows commands that are required when scripting a local Nova application prediction. Only one of the three commands is required, depending on the application. The three rightmost columns show whether the command applies to NF (NovaFold), NFA (NovaFold Antibody) or ND (NovaDock).
| Name | Definition | Arguments and Defaults | NF | NFA | ND |
|---|---|---|---|---|---|
| novafold | Run a NovaFold structure prediction of the designated query sequence. Requires pre-installation of the ‘dnastar/novafold’ Docker image. | ✔ | |||
| novafold-antibody | Run a NovaFold antibody structure prediction. Requires pre-installation of the ‘dnastar/novafold-antibody’ Docker image. | ✔ | |||
| novadock | Run a NovaDock protein-protein complex prediction. Requires pre-installation of the ‘dnastar/novadock’ Docker image. | ✔ |
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