SeqMan NGen

Accurate Alignment and Assembly of Genomic Sequencing Data

• Assemble genome and transcriptome data from all major NGS and Sanger sequencing platforms.
• Align RNA-Seq, ChIP-Seq, miRNA, exome and whole genome sequencing data.
• Run assemblies locally or use DNASTAR Cloud Assemblies to utilize our cloud computing resources.
• Open results in SeqMan Ultra, ArrayStar, or GenVision Pro for comprehensive downstream analysis after assembly.

SeqMan Ultra

Sequence Assembly Analysis and Editing

• Visualize the orientation and distance between contigs.
• Identify large insertions and deletions and evaluate coverage.
• Order contigs into genomic scaffolds.
• Add sequences to close gaps between contigs.
• Analyze variants within the context of the alignment.

SeqMan Pro, DNASTAR’s legacy application for sequence assembly analysis, is also included in Lasergene 17, but will eventually be completely replaced by SeqMan Ultra.

ArrayStar

Gene Expression and SNP Analysis

• Evaluate global gene expression experiments, compare sequence variation, analyze RNA-Seq, ChIP-Seq, CNV, miRNA, and more.
• Analyze variants using assembly projects and/or SNP data from VCF files.
• Utilize annotation data from dbSNP and other SNP and gene databases to enrich and filter variant data.
• Import oligonucleotide microarray and spotted array data.
• Isolate gene mutations of interest using graphically rich visualizations, and identify their biological significance.

GenVision Pro

Genomic Visualization Software

• Visualize genomic sequencing results with high-quality, highly-customizable images that are easily exported for publication.
• Browse and compare data sets for RNA-Seq, ChIP-Seq, CNV, exome and whole genome sequencing projects.
• Compare coverage and peak plots to interpret gene expression and regulation.
• Analyze mRNA isoforms and view coverage along exons in RNA-Seq data using Sashimi plots.